Bioinformatica 2nd edition by Baxevanis, Andreas, Ouellette, Francis ISBN 0471383902 9780471383901

Bioinformatica 2nd edition by Baxevanis, Andreas D, Ouellette, B. F. Francis – Ebook PDF Instant Download/Delivery. 0471383902, 978-0471383901
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Product details:

ISBN 10:       0471383902
ISBN 13: 978-0471383901
Author:         Baxevanis, Andreas D, Ouellette, B. F. Francis

Bioinformatica 2nd Table of contents:

1. BIOINFORMATICS AND THE INTERNET
Andreas D. Baxevanis

• Internet Basics
• Connecting to the Internet
• Electronic Mail
• File Transfer Protocol
• The World Wide Web
• Internet Resources for Topics Presented in Chapter 1
• References

2. THE NCBI DATA MODEL
James M. Ostell, Sarah J. Wheelan, and Jonathan A. Kans

• Introduction
• PUBs: Publications or Perish
• SEQ-Ids: What’s in a Name?
• BIOSEQS: Sequences
• BIOSEQ-SETS: Collections of Sequences
• SEQ-ANNOT: Annotating the Sequence
• SEQ-DESCR: Describing the Sequence
• Using the Model
• Conclusions
• References

3. THE GENBANK SEQUENCE DATABASE
Irene Karsch Mizrachi and B. F. Francis Ouellette

• Introduction
• Primary and Secondary Databases
• Format vs. Content: Computers vs. Humans
• The Database
• The GenBank Flatfile: A Dissection
• Concluding Remarks
• Internet Resources for Topics Presented in Chapter 3
• References
• Appendices
  • Appendix 3.1 Example of GenBank Flatfile Format
  • Appendix 3.2 Example of EMBL Flatfile Format
  • Appendix 3.3 Example of a Record in CON Division

4. SUBMITTING DNA SEQUENCES TO THE DATABASES
Jonathan A. Kans and B. F. Francis Ouellette

• Introduction
• Why, Where, and What to Submit?
• DNA/RNA
• Population, Phylogenetic, and Mutation Studies
• Protein-Only Submissions
• How to Submit on the World Wide Web
• How to Submit with Sequin
• Updates
• Consequences of the Data Model
• EST/STS/GSS/HTG/SNP and Genome Centers
• Concluding Remarks
• Contact Points for Submission of Sequence Data to DDBJ/EMBL/GenBank
• Internet Resources for Topics Presented in Chapter 4
• References

5. STRUCTURE DATABASES
Christopher W. V. Hogue

• Introduction to Structures
• PDB: Protein Data Bank at the Research Collaboratory for Structural Bioinformatics (RCSB)
• MMDB: Molecular Modeling Database at NCBI
• Structure File Formats
• Visualizing Structural Information
• Database Structure Viewers
• Advanced Structure Modeling
• Structure Similarity Searching
• Internet Resources for Topics Presented in Chapter 5
• Problem Set
• References

6. GENOMIC MAPPING AND MAPPING DATABASES
Peter S. White and Tara C. Matise

• Interplay of Mapping and Sequencing
• Genomic Map Elements

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