New Efficient Algorithm for Detection of Horizontal Gene Transfer Events 1st Edition by Alix Boc, Vladimir Makarenkov 9783540200765

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ISBN 13: 9783540200765

Author: Alix Boc, Vladimir Makarenkov

This article addresses the problem of detection of horizontal gene transfers (HGT) in evolutionary data. We describe a new method allowing to predict the ways of possible HGT events which may have occurred during the evolution of a group of considered organisms. The proposed method proceeds by establishing differences between topologies of species and gene phylogenetic trees. Then, it uses a least-squares optimization procedure to test the possibility of horizontal gene transfers between any couple of branches of the species tree. In the application section we show how the introduced method can be used to predict eventual transfers of the rubisco rbcL gene in the molecular phylogeny including plastids, cyanobacteria, and proteobacteria.

New Efficient Algorithm for Detection of Horizontal Gene Transfer Events 1st Table of contents:

1.Introduction 

2. Description of the new method

3. Lateral gene transfers of the rbcL gene

4. Conclusion 

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